GeneRanking |
"GeneRanking" |
GeneRanking-class |
"GeneRanking" |
GenerateBootMatrix |
Altered datasets via bootstrap |
GenerateBootMatrix,ExpressionSet,character-method |
Altered datasets via bootstrap |
GenerateBootMatrix,missing,factor-method |
Altered datasets via bootstrap |
GenerateBootMatrix,missing,numeric-method |
Altered datasets via bootstrap |
GenerateBootMatrix-methods |
Altered datasets via bootstrap |
GenerateFoldMatrix |
Altered datasets via k-Jackknife or label exchange |
GenerateFoldMatrix,ExpressionSet,character-method |
Altered datasets via k-Jackknife or label exchange |
GenerateFoldMatrix,missing,factor-method |
Altered datasets via k-Jackknife or label exchange |
GenerateFoldMatrix,missing,numeric-method |
Altered datasets via k-Jackknife or label exchange |
GenerateFoldMatrix-methods |
Altered datasets via k-Jackknife or label exchange |
GeneSelector |
Select promising candidate genes |
GeneSelector,list-method |
Select promising candidate genes |
GeneSelector-methods |
Select promising candidate genes |
GeneSelectorOutput |
"GeneSelectorOutputRanking" |
GeneSelectorOutput-class |
"GeneSelectorOutputRanking" |
getLambda |
Internal functions |
GetStabilityDistance |
Stability measures for gene rankings |
GetStabilityDistance,RepeatedRanking-method |
Stability measures for gene rankings |
GetStabilityDistance-methods |
Stability measures for gene rankings |
GetStabilityOverlap |
Stability measures for gene lists |
GetStabilityOverlap,RepeatedRanking-method |
Stability measures for gene lists |
GetStabilityOverlap-methods |
Stability measures for gene lists |
GetStabilityUnion |
Stability measures for gene lists |
GetStabilityUnion,RepeatedRanking-method |
Stability measures for gene lists |
GetStabilityUnion-methods |
Stability measures for gene lists |
RankingBaldiLong |
Ranking based on the t-statistic of Baldi and Long |
RankingBaldiLong,ExpressionSet,character-method |
Ranking based on the t-statistic of Baldi and Long |
RankingBaldiLong,matrix,factor-method |
Ranking based on the t-statistic of Baldi and Long |
RankingBaldiLong,matrix,numeric-method |
Ranking based on the t-statistic of Baldi and Long |
RankingBaldiLong-methods |
Ranking based on the t-statistic of Baldi and Long |
RankingEbam |
Ranking based on the empirical Bayes approach of Efron et al. (2001) |
RankingEbam,ExpressionSet,character-method |
Ranking based on the empirical Bayes approach of Efron et al. (2001) |
RankingEbam,matrix,factor-method |
Ranking based on the empirical Bayes approach of Efron et al. (2001) |
RankingEbam,matrix,numeric-method |
Ranking based on the empirical Bayes approach of Efron et al. (2001) |
RankingEbam-methods |
Ranking based on the empirical Bayes approach of Efron et al. (2001) |
RankingFC |
Ranking based on the (log) foldchange |
RankingFC,ExpressionSet,character-method |
Ranking based on the (log) foldchange |
RankingFC,matrix,factor-method |
Ranking based on the (log) foldchange |
RankingFC,matrix,numeric-method |
Ranking based on the (log) foldchange |
RankingFC-methods |
Ranking based on the (log) foldchange |
RankingFoxDimmic |
Ranking based on the t-statistic of Fox and Dimmic |
RankingFoxDimmic,ExpressionSet,character-method |
Ranking based on the t-statistic of Fox and Dimmic |
RankingFoxDimmic,matrix,factor-method |
Ranking based on the t-statistic of Fox and Dimmic |
RankingFoxDimmic,matrix,numeric-method |
Ranking based on the t-statistic of Fox and Dimmic |
RankingFoxDimmic-methods |
Ranking based on the t-statistic of Fox and Dimmic |
RankingLimma |
Ranking based on the 'moderated' t statistic |
RankingLimma,ExpressionSet,character-method |
Ranking based on the 'moderated' t statistic |
RankingLimma,matrix,factor-method |
Ranking based on the 'moderated' t statistic |
RankingLimma,matrix,numeric-method |
Ranking based on the 'moderated' t statistic |
RankingLimma-methods |
Ranking based on the 'moderated' t statistic |
RankingPermutation |
Ranking based on permutation tests. |
RankingPermutation,ExpressionSet,character-method |
Ranking based on permutation tests. |
RankingPermutation,matrix,factor-method |
Ranking based on permutation tests. |
RankingPermutation,matrix,numeric-method |
Ranking based on permutation tests. |
RankingPermutation-methods |
Ranking based on permutation tests. |
RankingSam |
Ranking based on the SAM statistic |
RankingSam,ExpressionSet,character-method |
Ranking based on the SAM statistic |
RankingSam,matrix,factor-method |
Ranking based on the SAM statistic |
RankingSam,matrix,numeric-method |
Ranking based on the SAM statistic |
RankingSam-methods |
Ranking based on the SAM statistic |
RankingShrinkageT |
Ranking based on the 'shrinkage t' statistic |
RankingShrinkageT,ExpressionSet,character-method |
Ranking based on the 'shrinkage t' statistic |
RankingShrinkageT,matrix,factor-method |
Ranking based on the 'shrinkage t' statistic |
RankingShrinkageT,matrix,numeric-method |
Ranking based on the 'shrinkage t' statistic |
RankingShrinkageT-methods |
Ranking based on the 'shrinkage t' statistic |
RankingSoftthresholdT |
Ranking via the 'soft-threshold' t-statistic |
RankingSoftthresholdT,ExpressionSet,character-method |
Ranking via the 'soft-threshold' t-statistic |
RankingSoftthresholdT,matrix,factor-method |
Ranking via the 'soft-threshold' t-statistic |
RankingSoftthresholdT,matrix,numeric-method |
Ranking via the 'soft-threshold' t-statistic |
RankingSoftthresholdT-methods |
Ranking via the 'soft-threshold' t-statistic |
RankingTstat |
Ranking based on the 'ordinary' t statistic. |
RankingTstat,ExpressionSet,character-method |
Ranking based on the 'ordinary' t statistic. |
RankingTstat,matrix,factor-method |
Ranking based on the 'ordinary' t statistic. |
RankingTstat,matrix,numeric-method |
Ranking based on the 'ordinary' t statistic. |
RankingTstat-methods |
Ranking based on the 'ordinary' t statistic. |
RankingWelchT |
Ranking based on the Welch t statistic. |
RankingWelchT,ExpressionSet,character-method |
Ranking based on the Welch t statistic. |
RankingWelchT,matrix,factor-method |
Ranking based on the Welch t statistic. |
RankingWelchT,matrix,numeric-method |
Ranking based on the Welch t statistic. |
RankingWelchT-methods |
Ranking based on the Welch t statistic. |
RankingWilcEbam |
Ranking based on the empirical bayes approach of Efron |
RankingWilcEbam,ExpressionSet,character-method |
Ranking based on the empirical bayes approach of Efron |
RankingWilcEbam,matrix,factor-method |
Ranking based on the empirical bayes approach of Efron |
RankingWilcEbam,matrix,numeric-method |
Ranking based on the empirical bayes approach of Efron |
RankingWilcEbam-methods |
Ranking based on the empirical bayes approach of Efron |
RankingWilcoxon |
Ranking based on the Wilcoxon statistic |
RankingWilcoxon,ExpressionSet,character-method |
Ranking based on the Wilcoxon statistic |
RankingWilcoxon,matrix,factor-method |
Ranking based on the Wilcoxon statistic |
RankingWilcoxon,matrix,numeric-method |
Ranking based on the Wilcoxon statistic |
RankingWilcoxon-methods |
Ranking based on the Wilcoxon statistic |
RepeatedRanking |
"RepeatedRanking" |
RepeatedRanking-class |
"RepeatedRanking" |
RepeatRanking |
Repeat the ranking procedure for altered data sets |
RepeatRanking,GeneRanking,BootMatrix,missing,missing,missing-method |
Repeat the ranking procedure for altered data sets |
RepeatRanking,GeneRanking,FoldMatrix,ANY,missing,missing-method |
Repeat the ranking procedure for altered data sets |
RepeatRanking,GeneRanking,missing,missing,ANY,ANY-method |
Repeat the ranking procedure for altered data sets |
RepeatRanking-methods |
Repeat the ranking procedure for altered data sets |