Package: consensusDE
Type: Package
Title: RNA-seq analysis using multiple algorithms
Version: 1.4.0
Author: Ashley J. Waardenberg
Maintainer: Ashley J. Waardenberg <a.waardenberg@gmail.com>
Description: This package allows users to perform DE analysis using multiple 
    algorithms. It seeks consensus from multiple methods. Currently it supports 
    "Voom", "EdgeR" and "DESeq". It uses RUV-seq (optional) to remove unwanted 
    sources of variation.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.0
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
biocViews: Transcriptomics, MultipleComparison, Clustering, Sequencing,
        Software
Depends: R (>= 3.5), BiocGenerics
Imports: airway, AnnotationDbi, BiocParallel, Biobase, Biostrings,
        data.table, dendextend, DESeq2 (>= 1.20.0), EDASeq, ensembldb,
        edgeR, EnsDb.Hsapiens.v86, GenomicAlignments, GenomicFeatures,
        limma, org.Hs.eg.db, pcaMethods, RColorBrewer, Rsamtools,
        RUVSeq, S4Vectors, stats, SummarizedExperiment,
        TxDb.Dmelanogaster.UCSC.dm3.ensGene, utils
git_url: https://git.bioconductor.org/packages/consensusDE
git_branch: RELEASE_3_10
git_last_commit: faa0c14
git_last_commit_date: 2019-10-29
Date/Publication: 2019-10-29
NeedsCompilation: no
Packaged: 2019-10-30 03:32:04 UTC; biocbuild
Built: R 3.6.1; ; 2019-10-30 11:50:50 UTC; unix
