Changes in version 1.3.4 (2019-09-16)
+ table_means function of multi_de_pairs updated to be n=1 aware
+ add warning when less than two biological replicates

Changes in version 1.3.3 (2019-06-27)
+ norm_method paramter in multi_de_pairs to allow only EDASeq normalisation 

Changes in version 1.3.2 (2019-06-21)
+ make character output for annotation
+ remove prior normalisation for RUVr

Changes in version 1.3.1 (2019-06-18)
+ fix buildSummarized bug in detection of minimum paired numbers
+ fix buildSummarized htseq with out of order rownames
+ add parameter to buildSummarized for technical_reps
+ technical_reps merges reads from technical replicates
+ change merged column name from p_max to p_intersect
+ change LogFC of merged results to mean(LogFC) of all methods
+ change AveExpr of merged results to mean(AveExpr) of all methods
+ addition of merged column name p_union (Union)
+ addition of merged column name LogFC_sd (Standard Deviation of FC)
+ updating plotting functions to add weight for LogFC_sd
+ add numbers for each category to legend of plots
+ disabled cooksCutoff for DESeq2 for comparability of all p-value rankings
+ add option gtf_annotate multi_de_pairs for annotation of gene symbols from gtf and combine with tx_db
+ update vignette
+ version 1.3.0 onwards is BioC 3.9

Changes in version 1.0.7 (2019-03-01)
+ export RUV corrected summarized file before model fit
+ option to summarize read by transcript, exon or cds added to buildSummarized
+ added chromosome coordinates to annotation of merged results
+ include gtf or txdb as meta-data in summarized object
+ added option, htseq_dir, to import HTSEQ count files to buildSummarized
+ fixed sample_table format check (refactorise)

Changes in version 1.0.6 (2019-12-31)
+ add legend and label option to multi_de_plots
+ fixing bug for paired mode model matrix in multi_de_pairs without RUV
+ update vignette

Changes in version 1.0.5 (2019-12-16)
+ fixing first column name when writing tables for edgeR, Voom and DEseq
+ fixed RUV model coefficients carrying through

Changes in version 1.0.4 (2019-12-12)
+ fixed ranking bug for combined data
+ adding min_p to merged tables

Changes in version 1.0.3 (2019-12-10)
+ fixed ensembl_annotate option for multi_de_pairs
+ added BiocGenerics as depends

Changes in version 1.0.2 (2019-12-09)
+ filter error update to buildSummarized
+ add error reporting with incorrect pairs or group numbers
+ add option to force_build to buildSummarized
+ fix color bug in diag_plots
+ fix annotation documentation for multi_de_pairs
+ update filter option to permit from summarized experiment
+ update vignette

Changes in version 1.0.1 (2019-12-07)
+ Fixed bugs - build gtf from path

Changes in version 1.0.0 (2018-11-01)
+ Submitted to Bioconductor
