Package: INSPEcT
Type: Package
Title: Modeling RNA synthesis, processing and degradation with RNA-seq
        data
Version: 1.16.3
Date: 2019-11-25
Author: Stefano de Pretis
Maintainer: Stefano de Pretis <ste.depo@gmail.com>,
 Mattia Furlan <Mattia.Furlan@iit.it>
Description: INSPEcT (INference of Synthesis, Processing and 
	dEgradation rates from Transcriptomic data) RNA-seq data
	in time-course experiments or steady-state conditions, with
	or without the support of nascent RNA data.
License: GPL-2
Depends: R (>= 3.5), methods, Biobase, BiocParallel
Imports: pROC, deSolve, rootSolve, KernSmooth, gdata, GenomicFeatures,
        GenomicRanges, IRanges, BiocGenerics, GenomicAlignments,
        Rsamtools, S4Vectors, GenomeInfoDb, DESeq2, plgem,
        SummarizedExperiment, TxDb.Mmusculus.UCSC.mm9.knownGene, shiny
Suggests: BiocStyle, knitr, rmarkdown
VignetteBuilder: knitr
biocViews: Sequencing, RNASeq, GeneRegulation, TimeCourse,
        SystemsBiology
NeedsCompilation: no
RoxygenNote: 7.0.2
git_url: https://git.bioconductor.org/packages/INSPEcT
git_branch: RELEASE_3_10
git_last_commit: 57a0ad7
git_last_commit_date: 2020-02-03
Date/Publication: 2020-02-03
Packaged: 2020-02-04 02:41:42 UTC; biocbuild
Built: R 3.6.2; ; 2020-02-04 13:11:21 UTC; unix
