segmentSeq-package |
Segmentation of the genome based on multiple samples of high-throughput
sequencing data. |
alignmentData |
Class "alignmentData" |
alignmentData-class |
Class "alignmentData" |
dim-method |
Class "alignmentData" |
dim-method |
Class "segData" |
filterSegments |
Filters an set of segments (given an ordering on the segments) such that
no segments overlap. |
getCounts |
Gets counts from alignment data from a set of genome segments. |
getPriors |
Finds a set of priors for a 'segData' object. |
initialize-method |
Class "alignmentData" |
initialize-method |
Class "segData" |
plotGenome |
Plots the alignment of sequence tags on the genome given an
'aligmentData' object and (optionally) a set of segments found. |
processAD |
Processes an 'alignmentData' object into a 'segData' object for segmentation. |
processTags |
Convenience function for processing tab-delimited files in a
certain format into an 'alignmentData' object. |
segData-class |
Class "segData" |
segmentSeq |
Segmentation of the genome based on multiple samples of high-throughput
sequencing data. |
segmentSequences |
Takes the 'segData' object and uses it to define segments on the genome. |
show-method |
Class "alignmentData" |
show-method |
Class "segData" |
[-method |
Class "alignmentData" |
[-method |
Class "segData" |