smer: Sparse Marginal Epistasis Test

The Sparse Marginal Epistasis Test is a computationally efficient genetics method which detects statistical epistasis in complex traits; see Stamp et al. (2025, <doi:10.1101/2025.01.11.632557>) for details.

Version: 0.0.2
Depends: R (≥ 4.4.0)
Imports: dplyr, genio, logging, mvMAPIT, Rcpp, tidyr
LinkingTo: BH, HighFive, Rcpp, RcppEigen, Rhdf5lib, testthat
Suggests: GenomicRanges, ggplot2, knitr, rmarkdown, testthat (≥ 3.0.0), xml2
Published: 2025-08-22
DOI: 10.32614/CRAN.package.smer
Author: Julian Stamp ORCID iD [cre, aut], Lorin Crawford ORCID iD [aut], sriramlab [cph] (Author of included mailman algorithm)
Maintainer: Julian Stamp <julian.d.stamp at gmail.com>
BugReports: https://github.com/lcrawlab/sme/issues
License: MIT + file LICENSE
URL: https://github.com/lcrawlab/sme, https://lcrawlab.github.io/sme/
NeedsCompilation: yes
SystemRequirements: GNU make
Materials: README, NEWS
CRAN checks: smer results

Documentation:

Reference manual: smer.html , smer.pdf
Vignettes: How To Use the Sparse Marginal Epistasis Test (source, R code)
Conditioning Epistasis Search on Open Chromatin (source, R code)
How To Cite Our Work (source, R code)
How To Create a Mask File (source, R code)
How To Optimize the Memory Requirements of SME (source, R code)
How To Simulate Traits (source, R code)

Downloads:

Package source: smer_0.0.2.tar.gz
Windows binaries: r-devel: smer_0.0.2.zip, r-release: smer_0.0.2.zip, r-oldrel: smer_0.0.2.zip
macOS binaries: r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available
Old sources: smer archive

Linking:

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