phoenics: Pathways Longitudinal and Differential Analysis in Metabolomics
Perform a differential analysis at pathway level based on
metabolite quantifications and information on pathway metabolite
composition. The method, described in Guilmineau et al (2025)
<doi:10.1186/s12859-025-06118-z> is based on a Principal Component
Analysis step and on a linear mixed model.
Automatic query of metabolic pathways is also implemented.
| Version: |
0.6 |
| Depends: |
R (≥ 4.0.0) |
| Imports: |
lme4, blme, tibble, FactoMineR, factoextra, tidyr, stats |
| Suggests: |
knitr, KEGGREST |
| Published: |
2025-08-19 |
| DOI: |
10.32614/CRAN.package.phoenics |
| Author: |
Camille Guilmineau [aut],
Remi Servien 
[aut, cre],
Nathalie Vialaneix
[aut] |
| Maintainer: |
Remi Servien <remi.servien at inrae.fr> |
| BugReports: |
https://forge.inrae.fr/panoramics/phoenics/-/issues |
| License: |
GPL-3 |
| URL: |
https://forge.inrae.fr/panoramics/phoenics |
| NeedsCompilation: |
no |
| Language: |
en-US |
| Citation: |
phoenics citation info |
| Materials: |
NEWS |
| CRAN checks: |
phoenics results |
Documentation:
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