Advanced methods for a valuable quantitative environmental risk assessment using Bayesian inference of survival Data with toxicokinetics toxicodynamics (TKTD) models. Among others, it facilitates Bayesian inference of the general unified threshold model of survival (GUTS). See models description in Jager et al. (2011) <doi:10.1021/es103092a> and implementation using Bayesian inference in Baudrot and Charles (2019) <doi:10.1038/s41598-019-47698-0>.
| Version: | 0.1.3 |
| Depends: | R (≥ 3.5.0) |
| Imports: | deSolve, ggplot2, gridExtra, methods, Rcpp (≥ 0.12.0), RcppParallel (≥ 5.0.1), rstan (≥ 2.18.1), rstantools (≥ 2.4.0), testthat, zoo |
| LinkingTo: | BH (≥ 1.66.0), Rcpp (≥ 0.12.0), RcppEigen (≥ 0.3.3.3.0), RcppParallel (≥ 5.0.1), rstan (≥ 2.18.1), StanHeaders (≥ 2.18.0) |
| Suggests: | knitr, rmarkdown, xml2 |
| Published: | 2025-06-04 |
| DOI: | 10.32614/CRAN.package.morseTKTD |
| Author: | Virgile Baudrot [aut, cre], Sandrine Charles [aut], Marie Laure Delignette-Muller [aut], Benoit Goussen [ctb], Nils Kehrein [ctb], Guillaume Kon-Kam-King [ctb], Christelle Lopes [ctb], Alexander Singer [ctb], Philippe Veber [aut] |
| Maintainer: | Virgile Baudrot <virgile.baudrot at qonfluens.com> |
| License: | AGPL (≥ 3) |
| NeedsCompilation: | yes |
| SystemRequirements: | GNU make |
| Materials: | README NEWS |
| CRAN checks: | morseTKTD results |
| Reference manual: | morseTKTD.pdf |
| Vignettes: |
Models (source) Tutorial (source, R code) |
| Package source: | morseTKTD_0.1.3.tar.gz |
| Windows binaries: | r-devel: morseTKTD_0.1.3.zip, r-release: morseTKTD_0.1.3.zip, r-oldrel: morseTKTD_0.1.3.zip |
| macOS binaries: | r-release (arm64): morseTKTD_0.1.3.tgz, r-oldrel (arm64): morseTKTD_0.1.3.tgz, r-release (x86_64): morseTKTD_0.1.3.tgz, r-oldrel (x86_64): morseTKTD_0.1.3.tgz |
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