mixtree: A Statistical Framework for Comparing Sets of Trees

Statistical framework for comparing sets of trees using hypothesis testing methods. Designed for transmission trees, phylogenetic trees, and directed acyclic graphs (DAGs), the package implements chi-squared tests to compare edge frequencies between sets and PERMANOVA to analyse topological dissimilarities with customisable distance metrics, following Anderson (2001) <doi:10.1111/j.1442-9993.2001.01070.pp.x>.

Version: 0.0.1
Imports: igraph, treespace, vegan
Suggests: knitr, rmarkdown
Published: 2025-03-05
DOI: 10.32614/CRAN.package.mixtree
Author: Cyril Geismar ORCID iD [aut, cre, cph]
Maintainer: Cyril Geismar <c.geismar21 at imperial.ac.uk>
License: MIT + file LICENSE
URL: https://cygei.github.io/mixtree/
NeedsCompilation: no
Materials: README
CRAN checks: mixtree results

Documentation:

Reference manual: mixtree.html , mixtree.pdf
Vignettes: mixtree (source, R code)

Downloads:

Package source: mixtree_0.0.1.tar.gz
Windows binaries: r-devel: mixtree_0.0.1.zip, r-release: mixtree_0.0.1.zip, r-oldrel: mixtree_0.0.1.zip
macOS binaries: r-release (arm64): mixtree_0.0.1.tgz, r-oldrel (arm64): mixtree_0.0.1.tgz, r-release (x86_64): mixtree_0.0.1.tgz, r-oldrel (x86_64): mixtree_0.0.1.tgz

Reverse dependencies:

Reverse suggests: o2ools

Linking:

Please use the canonical form https://CRAN.R-project.org/package=mixtree to link to this page.