| Type: | Package |
| Title: | Function that Creates a Heat Map from Hybridization Data |
| Version: | 0.3.2 |
| Author: | Matthew Cserhati |
| Maintainer: | Matthew Cserhati <csmatyi@protonmail.com> |
| Description: | Using hybrid data, this package created a vividly colored hybrid heat map. The input is two files which are auto-selected. The first file has three columns, the first two for pairs of species, with the third column for the hybrid experiment code (an integer). The second file is a list of code and their descriptions in two columns. The output is a figure showing the hybrid heat map with a color legend. |
| License: | GPL-3 |
| Encoding: | UTF-8 |
| RoxygenNote: | 7.1.1 |
| Suggests: | knitr, rmarkdown |
| VignetteBuilder: | knitr |
| Imports: | pheatmap |
| NeedsCompilation: | no |
| Packaged: | 2021-05-21 13:41:25 UTC; matth |
| Repository: | CRAN |
| Date/Publication: | 2021-05-23 23:50:06 UTC |
Function that Creates a Heat Map from Hybridization Data
Description
R package which takes a list of hybridization results along with a code and creates a heat map.
Version 0.3.2 Author: Dr. Matthew Cserhati Email: csmatyi@protonmail.com May 21, 2021
Arguments
hybrid_data |
a data frame with three columns: species1, species2, code |
codes |
a data frame with two columns: code, description |
Value
nil
References
Wood, T. C., and Murray, M. J. (2003) Understanding the Pattern of Life. Nashville, TN: Broadman & Holman.
Examples
V1 <- c("Phoca largha","Phoca largha","Phoca caspica")
V2 <- c("Phoca vitulina","Phoca caspica","Pusa hispida")
V3 <- c(2,3,3)
hybrid_data <- data.frame(V1,V2,V3)
C1 <- c(1,2,3)
C2 <- c("No hybrid","Hybrid with same 3rd species","Documented hybrid")
codes <- data.frame(C1,C2)
hybridogram(hybrid_data, codes)