epiCo: Statistical and Viz Tools for Vector-Borne Diseases in Colombia

Provides statistical and visualization tools for the analysis of demographic indicators, and spatio-temporal behavior and characterization of outbreaks of vector-borne diseases (VBDs) in Colombia. It implements travel times estimated in Bravo-Vega C., Santos-Vega M., & Cordovez J.M. (2022), and the endemic channel method (Bortman, M. (1999) <https://iris.paho.org/handle/10665.2/8562>).

Version: 1.0.1
Depends: R (≥ 4.0.0)
Imports: dplyr, ggplot2, ggraph, grDevices, igraph, incidence, leaflet, lubridate, magrittr, rlang, scales, spdep, stats, treemapify, utils
Suggests: checkmate, covr, knitr, rmarkdown, spelling, testthat (≥ 3.0.0)
Published: 2025-01-15
DOI: 10.32614/CRAN.package.epiCo
Author: Juan D. Umaña ORCID iD [aut, cre, cph], Juan Montenegro-Torres ORCID iD [aut], Julian Otero ORCID iD [aut], Hugo Gruson ORCID iD [ctb]
Maintainer: Juan D. Umaña <jd.umana10 at uniandes.edu.co>
BugReports: https://github.com/epiverse-trace/epiCo/issues
License: MIT + file LICENSE
URL: https://epiverse-trace.github.io/epiCo/, https://github.com/epiverse-trace/epiCo
NeedsCompilation: no
Language: en-US
Materials: README, NEWS
In views: Epidemiology
CRAN checks: epiCo results

Documentation:

Reference manual: epiCo.html , epiCo.pdf
Vignettes: Analyzing demographic data with epiCo (source, R code)
Building an Endemic Channel with epiCo (source, R code)
Spatiotemporal analyses with epiCo (source, R code)

Downloads:

Package source: epiCo_1.0.1.tar.gz
Windows binaries: r-devel: epiCo_1.0.1.zip, r-release: epiCo_1.0.1.zip, r-oldrel: epiCo_1.0.1.zip
macOS binaries: r-release (arm64): epiCo_1.0.1.tgz, r-oldrel (arm64): epiCo_1.0.1.tgz, r-release (x86_64): epiCo_1.0.1.tgz, r-oldrel (x86_64): epiCo_1.0.1.tgz
Old sources: epiCo archive

Linking:

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