coloc: Colocalisation Tests of Two Genetic Traits

Performs the colocalisation tests described in Giambartolomei et al (2013) <doi:10.1371/journal.pgen.1004383>, Wallace (2020) <doi:10.1371/journal.pgen.1008720>, Wallace (2021) <doi:10.1371/journal.pgen.1009440>.

Version:	5.2.3
Depends:	R (≥ 3.5)
Imports:	data.table, ggplot2, methods, viridis, stats, grDevices, susieR (≥ 0.12.06), utils
Suggests:	knitr, testthat, mvtnorm, magrittr, rmarkdown
Published:	2023-10-03
DOI:	10.32614/CRAN.package.coloc
Author:	Chris Wallace [aut, cre], Claudia Giambartolomei [aut], Vincent Plagnol [ctb]
Maintainer:	Chris Wallace <cew54 at cam.ac.uk>
BugReports:	https://github.com/chr1swallace/coloc/issues
License:	GPL-2 | GPL-3 [expanded from: GPL]
URL:	https://github.com/chr1swallace/coloc
NeedsCompilation:	no
Citation:	coloc citation info
Materials:	README, NEWS
CRAN checks:	coloc results

Documentation:

Reference manual:	coloc.html , coloc.pdf
Vignettes:	Coloc: a package for colocalisation analyses (source) Coloc: data structures (source, R code) Coloc: under a single causal variant assumption (source, R code) Coloc: sensitivity to prior values (source, R code) DEPRECATED Coloc: relaxing the single causal variant assumption (source, R code) Coloc: using SuSiE to relax the single causal variant assumption (source, R code)

Downloads:

Package source:	coloc_5.2.3.tar.gz
Windows binaries:	r-devel: coloc_5.2.3.zip, r-release: coloc_5.2.3.zip, r-oldrel: coloc_5.2.3.zip
macOS binaries:	r-release (arm64): coloc_5.2.3.tgz, r-oldrel (arm64): coloc_5.2.3.tgz, r-release (x86_64): coloc_5.2.3.tgz, r-oldrel (x86_64): coloc_5.2.3.tgz
Old sources:	coloc archive

Reverse dependencies:

Reverse imports:

colocPropTest, cophescan, RapidoPGS

Linking:

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