PathwayVote: Robust Pathway Enrichment for DNA Methylation Studies Using Ensemble Voting
Implements a robust, voting-based pathway enrichment method designed for DNA methylation data analysis. The algorithm allows the input of expression quantitative trait methylation (eQTM) data to aggregates pathway signals across multiple parameter settings, and selects pathways supported across combinations using a vote-pruning strategy.
| Version: | 0.1.0 |
| Depends: | R (≥ 4.0.0) |
| Imports: | dplyr, org.Hs.eg.db, ReactomePA, clusterProfiler, AnnotationDbi, methods, future, furrr, parallelly |
| Suggests: | testthat |
| Published: | 2025-04-16 |
| DOI: | 10.32614/CRAN.package.PathwayVote |
| Author: | Yinan Zheng  [aut,
cre] |
| Maintainer: | Yinan Zheng <y-zheng at northwestern.edu> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | no |
| CRAN checks: | PathwayVote results |
Documentation:
| Reference manual: | PathwayVote.pdf |
Downloads:
| Package source: | PathwayVote_0.1.0.tar.gz |
| Windows binaries: | r-devel: PathwayVote_0.1.0.zip, r-release: PathwayVote_0.1.0.zip, r-oldrel: PathwayVote_0.1.0.zip |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available |
Linking:
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