Last updated on 2025-09-04 13:48:51 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.0 | 6.30 | 77.49 | 83.79 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.2.1 | 4.35 | 55.61 | 59.96 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2.1 | 111.32 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.1 | 115.76 | ERROR | |||
| r-devel-windows-x86_64 | 1.2.1 | 10.00 | 81.00 | 91.00 | ERROR | |
| r-patched-linux-x86_64 | 1.2.1 | 6.01 | 70.19 | 76.20 | ERROR | |
| r-release-linux-x86_64 | 1.2.0 | 5.83 | 71.16 | 76.99 | ERROR | |
| r-release-macos-arm64 | 1.2.1 | 43.00 | OK | |||
| r-release-macos-x86_64 | 1.2.1 | 93.00 | OK | |||
| r-release-windows-x86_64 | 1.2.0 | 8.00 | 91.00 | 99.00 | OK | |
| r-oldrel-macos-arm64 | 1.2.0 | 52.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.2.1 | 93.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.2.1 | 11.00 | 162.00 | 173.00 | OK |
Version: 1.2.0
Check: examples
Result: ERROR
Running examples in ‘fluxfinder-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ffi_qaqc
> ### Title: Generate a QA/QC document
> ### Aliases: ffi_qaqc
>
> ### ** Examples
>
> # Toy data
> cars$Plot <- c("A", "B")
> fd <- ffi_compute_fluxes(cars, "Plot", "speed", "dist")
> x <- ffi_qaqc(fd, group_column = "Plot", output_dir = tempdir())
processing file: qaqc.Rmd
Warning in file(con, "w") :
cannot open file 'qaqc.knit.md': Read-only file system
Error in file(con, "w") : cannot open the connection
Calls: ffi_qaqc ... <Anonymous> -> <Anonymous> -> write_utf8 -> writeLines -> file
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-release-linux-x86_64
Version: 1.2.1
Check: examples
Result: ERROR
Running examples in ‘fluxfinder-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ffi_qaqc
> ### Title: Generate a QA/QC document
> ### Aliases: ffi_qaqc
>
> ### ** Examples
>
> # Toy data
> cars$Plot <- c("A", "B")
> fd <- ffi_compute_fluxes(cars, "Plot", "speed", "dist")
> x <- ffi_qaqc(fd, group_column = "Plot", output_dir = tempdir())
processing file: qaqc.Rmd
Warning in file(con, "w") :
cannot open file 'qaqc.knit.md': Read-only file system
Error in file(con, "w") : cannot open the connection
Calls: ffi_qaqc ... <Anonymous> -> <Anonymous> -> write_utf8 -> writeLines -> file
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64
Version: 1.2.1
Check: examples
Result: ERROR
Running examples in ‘fluxfinder-Ex.R’ failed
The error most likely occurred in:
> ### Name: ffi_compute_fluxes
> ### Title: Compute fluxes for multiple groups (measurements)
> ### Aliases: ffi_compute_fluxes
>
> ### ** Examples
>
> # No grouping
> ffi_compute_fluxes(cars, group_column = NULL, "speed", "dist")
Error in ll(object) : could not find function "ll"
Calls: ffi_compute_fluxes ... tibble_quos -> eval_tidy -> <Anonymous> -> AIC.default
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [5s/12s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(fluxfinder)
>
> test_check("fluxfinder")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 94 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-models.R:3:3'): ffi_fit_models works ───────────────────────────
Error in `ll(object)`: could not find function "ll"
Backtrace:
▆
1. ├─fluxfinder::ffi_fit_models(cars$speed, cars$dist) at test-models.R:3:3
2. │ ├─generics::glance(mod)
3. │ └─broom:::glance.lm(mod)
4. │ ├─base::with(...)
5. │ └─base::with.default(...)
6. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
7. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
8. │ └─tibble::tibble(...)
9. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)
10. │ └─rlang::eval_tidy(xs[[j]], mask)
11. ├─stats::AIC(x)
12. └─stats:::AIC.default(x)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 94 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.2.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘integrating-gasfluxes.Rmd’ using rmarkdown
Quitting from integrating-gasfluxes.Rmd:29-43 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `ll()`:
! could not find function "ll"
---
Backtrace:
▆
1. ├─fluxfinder::ffi_compute_fluxes(...)
2. │ └─base::lapply(x, f, ...)
3. │ └─fluxfinder (local) FUN(X[[i]], ...)
4. │ └─fluxfinder (local) fit_function(x$.norm_time, x[, gas_column], ...)
5. │ ├─generics::glance(mod)
6. │ └─broom:::glance.lm(mod)
7. │ ├─base::with(...)
8. │ └─base::with.default(...)
9. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
10. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
11. │ └─tibble::tibble(...)
12. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)
13. │ └─rlang::eval_tidy(xs[[j]], mask)
14. ├─stats::AIC(x)
15. └─stats:::AIC.default(x)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'integrating-gasfluxes.Rmd' failed with diagnostics:
could not find function "ll"
--- failed re-building ‘integrating-gasfluxes.Rmd’
--- re-building ‘intro-to-fluxfinder.Rmd’ using rmarkdown
Quitting from intro-to-fluxfinder.Rmd:187-206 [compute-fluxes]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `ll()`:
! could not find function "ll"
---
Backtrace:
▆
1. ├─fluxfinder::ffi_compute_fluxes(...)
2. │ └─base::lapply(x, f, ...)
3. │ └─fluxfinder (local) FUN(X[[i]], ...)
4. │ └─fluxfinder (local) fit_function(x$.norm_time, x[, gas_column], ...)
5. │ ├─generics::glance(mod)
6. │ └─broom:::glance.lm(mod)
7. │ ├─base::with(...)
8. │ └─base::with.default(...)
9. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
10. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
11. │ └─tibble::tibble(...)
12. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)
13. │ └─rlang::eval_tidy(xs[[j]], mask)
14. ├─stats::AIC(x)
15. └─stats:::AIC.default(x)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'intro-to-fluxfinder.Rmd' failed with diagnostics:
could not find function "ll"
--- failed re-building ‘intro-to-fluxfinder.Rmd’
SUMMARY: processing the following files failed:
‘integrating-gasfluxes.Rmd’ ‘intro-to-fluxfinder.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(fluxfinder)
>
> test_check("fluxfinder")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 94 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-models.R:3:3'): ffi_fit_models works ───────────────────────────
Error in `ll(object)`: could not find function "ll"
Backtrace:
▆
1. ├─fluxfinder::ffi_fit_models(cars$speed, cars$dist) at test-models.R:3:3
2. │ ├─generics::glance(mod)
3. │ └─broom:::glance.lm(mod)
4. │ ├─base::with(...)
5. │ └─base::with.default(...)
6. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
7. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
8. │ └─tibble::tibble(...)
9. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)
10. │ └─rlang::eval_tidy(xs[[j]], mask)
11. ├─stats::AIC(x)
12. └─stats:::AIC.default(x)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 94 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.2.1
Check: tests
Result: ERROR
Running 'testthat.R' [3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(fluxfinder)
>
> test_check("fluxfinder")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 94 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-models.R:3:3'): ffi_fit_models works ───────────────────────────
Error in `ll(object)`: could not find function "ll"
Backtrace:
▆
1. ├─fluxfinder::ffi_fit_models(cars$speed, cars$dist) at test-models.R:3:3
2. │ ├─generics::glance(mod)
3. │ └─broom:::glance.lm(mod)
4. │ ├─base::with(...)
5. │ └─base::with.default(...)
6. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
7. │ └─base::eval(substitute(expr), data, enclos = parent.frame())
8. │ └─tibble::tibble(...)
9. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)
10. │ └─rlang::eval_tidy(xs[[j]], mask)
11. ├─stats::AIC(x)
12. └─stats:::AIC.default(x)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 94 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64