add_metadata            Add Metadata to Fragments List
assign_index_peaks      Assign index peaks
calculate_instability_metrics
                        Calculate Repeat Instability Metrics
call_repeats            Call Repeats for Fragments
cell_line_fsa_list      A list of fsa files
example_data            example_data
example_data_repeat_table
                        example_data_repeat_table
extract_alleles         Extract Modal Peaks
extract_fragments       Extract All Fragments
extract_ladder_summary
                        Extract ladder summary
extract_repeat_correction_summary
                        Extract repeat correction summary
extract_trace_table     Extract traces
find_alleles            Find Alleles
find_fragments          Find fragment peaks
find_ladders            Ladder and bp sizing
fix_ladders_interactive
                        Fix ladders interactively
fix_ladders_manual      Fix ladders manually
fragments               fragments object
fragments_repeats       fragments_repeats object
fragments_trace         fragments_trace object
generate_trace_template
                        Generate a Quarto file that has the instability
                        pipeline preset
metadata                metadata
peak_table_to_fragments
                        Convert Peak Table to Fragments_repeats class
plot_batch_correction_samples
                        Plot correction samples
plot_data_channels      plot_data_channels
plot_fragments          Plot Peak Data
plot_ladders            Plot ladder
plot_repeat_correction_model
                        Plot Repeat Correction Model
plot_traces             Plot sample traces
read_fsa                Read fsa file
remove_fragments        Remove Samples from List
repeat_table_to_repeats
                        Convert Repeat Table to Repeats Fragments
