Digital PCR Analysis

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Documentation for package ‘dpcR’ version 0.6

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

dpcR-package	Digital PCR Analysis
adpcr	Class '"adpcr"' - end-point array digital PCR experiments
adpcr-class	Class '"adpcr"' - end-point array digital PCR experiments
adpcr2panel	Convert adpcr object to array
adpcr2ppp	Convert adpcr to ppp
binarize	Binarize digital PCR data
bind_dpcr	Bind dpcr objects
bind_dpcr,adpcr	Bind dpcr objects
bind_dpcr,dpcr	Bind dpcr objects
bind_dpcr,list	Bind dpcr objects
bind_dpcr-method	Bind dpcr objects
bind_dpcr-methods	Bind dpcr objects
bioamp	Analyze and plot a Bio-Rad droplet digital PCR experiment
BioradCNV	Copy number variation experiment
calc_coordinates	Calculate Array Coordinates
coef-method	Class '"count_test"'
compare_dens	Plot and Compare Densities
count_test	Class '"count_test"'
count_test-class	Class '"count_test"'
create_dpcr	Create dpcR object
ddpcRquant	Quantify droplets
df2dpcr	Convert data.frame to dpcr object
dpcR	Digital PCR Analysis
dpcr	Class '"dpcr"' - general digital PCR
dpcr-class	Class '"dpcr"' - general digital PCR
dpcr2df	Convert dpcr object to data frame
dpcr2df-method	Convert dpcr object to data frame
dpcr2df-methods	Convert dpcr object to data frame
dpcReport	Digital PCR Report Graphical User Interface
dPCRmethyl	Methylated human gDNA
dpcr_density	Calculate Density of Single dPCR Run
dpcr_density_gui	Digital PCR Density Graphical User Interface
dpcr_density_table	Calculate Density of Multiple dPCR runs
extract_dpcr	Extract Assays or Experiments
extract_run	Extract Digital PCR Run
limit_cq	Limit Cy0 values
many_peaks	Artificial data set with many peaks
moments	Calculate Moments of Poisson Distribution
moments-method	Calculate Moments of Poisson Distribution
moments-methods	Calculate Moments of Poisson Distribution
num2int	Convert numeric to integer
pds	Plasmid dilution series results
pds_raw	Plasmid dilution series raw data
plot-method	Class '"count_test"'
plot-method	Plot 'qdpcr' objects
plot.count_test	Class '"count_test"'
plot.qdpcr	Plot 'qdpcr' objects
plot_panel	Plot Panel
plot_vic_fam	Amplitude Plot VIC and FAM Channels of a Droplet Digital PCR Experiment
qdpcr	Class '"qdpcr"'
qdpcr-class	Class '"qdpcr"'
qpcr2pp	qPCR to Poisson Process
qpcr_analyser	qPCR Analyser
qpcr_analyser-method	qPCR Analyser
qpcr_analyser-methods	qPCR Analyser
read_amp	Read digital PCR amplitude raw data
read_BioMark	Read BioMark
read_dpcr	Read digital PCR data
read_QX100	Read QX100
read_QX200	Read QX200
read_redf	Read digital PCR raw data
rename_dpcr	Rename object
rtadpcr	Class '"rtadpcr"' - real-time array digital PCR experiments
rtadpcr-class	Class '"rtadpcr"' - real-time array digital PCR experiments
show	Methods for Function 'show'
show-method	Class '"count_test"'
show-method	Class '"qdpcr"'
show-method	Methods for Function 'show'
show-methods	Methods for Function 'show'
show.qdpcr	Class '"qdpcr"'
sim_adpcr	Simulate Array Digital PCR
sim_dpcr	Simulate Droplet Digital PCR
six_panels	Simulated Digital PCR data
summary	Methods for Function 'summary'
summary-method	Class '"count_test"'
summary-method	Class '"qdpcr"'
summary-method	Methods for Function 'summary'
summary-methods	Methods for Function 'summary'
summary.adpcr	Methods for Function 'summary'
summary.dpcr	Methods for Function 'summary'
summary.qdpcr	Class '"qdpcr"'
test_counts	Test counts
test_counts_gui	Compare digital PCR runs - interactive presentation
test_panel	Dispersion Test for Spatial Point Pattern in Array dPCR Based on Quadrat Counts
test_peaks	Peak Test
test_peaks-method	Peak Test
test_peaks-methods	Peak Test
test_pooled	Compare pooled digital PCR
White	Digitalized Data from a Fluidigm Array